2020

Stone, J.P., K. Pangle, S. Pothoven, S. Brandt, T.O. Höök, T. Johengen, and S. Ludsin. 2020. Hypoxia's impact on pelagic fish populations in Lake Erie: A tale of two planktivores. Canadian Journal of Fisheries and Aquatic Sciences.

2019

Briland, R.D., J.P. Stone, M. Manubolu, J. Lee, S.A. Ludsin. 2019. Cyanobacterial blooms modify food web structure and interactions in western Lake Erie. Harmful Algae, 92: 101586.​

Stone, J.P., D. K. Steinberg, M. C. Fabrizio. 2019. Long-term changes in gelatinous zooplankton in Chesapeake Bay, USA: Environmental controls and interspecific interactions.  Estuaries and Coasts, 42(2): 513-527.

2018

Stone, J.P., D. K. Steinberg. 2018. Influence of top-down control in the plankton food web on vertical carbon flux: a case study in the Chesapeake Bay. Journal of Experimental Marine Biology and Ecology, 498: 16-24.

2016

Stone, J.P., D. K. Steinberg. 2016. Salp contributions to vertical carbon flux in the Sargasso Sea. Deep-Sea Research I, 113: 90-100.

2014

Stone, J.P., D.K. Steinberg. 2014. Long-term time-series study of salp population dynamics in the Sargasso Sea. Marine Ecology Progress Series, 510:111-127.

2013

Lefcheck, J.S., M. A. Whalen, T. M. Davenport, J. P. Stone, J. E. Duffy. 2013.  Physiological effects of diet mixing on consumer fitness: a meta-analysis. Ecology, 94(3):565-572.

2010

Fisher, T.R., T.E. Jordan, K.W. Staver, A.B. Gustafson, A.I. Koskelo, R.J. Fox, A.J. Sutton, T. Kana, K.A. Beckert, J.P. Stone, G. McCarty, M. Lang. 2010. The Choptank Basin in Transition: Intensifying Agriculture, Slow Urbanization, and Estuarine Eutrophication, Ed. Michael J. Kennish and Hans W. Paerl. Coastal Lagoons: Critical Habitats of Environmental Change. CRC Press, 135-165.

2009

Stuckert, A.M.M., J.P. Stone, J.R. Asper, M.G. Rinker, C.L. Rutt, N.C. Trimmer & E.D. Lindquist. 2009. Microhabitat use and spatial distribution in Picado's Bromeliad Treefrog, Isthmohyla picadoi (Anura, Hylidae). Phyllomedusa, 8(2):125-134.